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科学家实现蛋白质逻辑门的从头设计
作者:小柯机器人 发布时间:2020/4/4 21:25:35

美国华盛顿大学David Baker团队实现了蛋白质逻辑门的从头设计。2020年4月3日,《科学》杂志发表了这一成果。

研究人员报道了根据从头设计蛋白质构建双输入AND、OR、NAND、NOR、XNOR和NOT逻辑门的设计。这些逻辑门在体外、酵母和原代人T细胞中调节了分裂酶到转录机器的任意蛋白质单元关联。在人类原代T细胞中,这些逻辑门能够控制与T细胞衰竭有关的TIM3基因的表达。
 
设计出的结合相互作用协同性(已通过天然质谱法确认)使逻辑门对输入的化学计量不平衡非常不敏感,并且该方法的模块化特性可以轻松地扩展到三输入:OR、AND以及析取范式门。控制元件的模块化和协作性,以及从头设计中蛋白质组分的数量不限,使得涉及大量生物学功能的复杂翻译后控制逻辑设计变为可能。
 
据悉,在转录后水平上调节蛋白质功能的模块化蛋白质逻辑的设计对于合成生物学是一个挑战。
 
附:英文原文

Title: De novo design of protein logic gates

Author: Zibo Chen, Ryan D. Kibler, Andrew Hunt, Florian Busch, Jocelynn Pearl, Mengxuan Jia, Zachary L. VanAernum, Basile I. M. Wicky, Galen Dods, Hanna Liao, Matthew S. Wilken, Christie Ciarlo, Shon Green, Hana El-Samad, John Stamatoyannopoulos, Vicki H. Wysocki, Michael C. Jewett, Scott E. Boyken, David Baker

Issue&Volume: 2020/04/03

Abstract: Abstract

The design of modular protein logic for regulating protein function at the posttranscriptional level is a challenge for synthetic biology. Here, we describe the design of two-input AND, OR, NAND, NOR, XNOR, and NOT gates built from de novo–designed proteins. These gates regulate the association of arbitrary protein units ranging from split enzymes to transcriptional machinery in vitro, in yeast and in primary human T cells, where they control the expression of the TIM3 gene related to T cell exhaustion. Designed binding interaction cooperativity, confirmed by native mass spectrometry, makes the gates largely insensitive to stoichiometric imbalances in the inputs, and the modularity of the approach enables ready extension to three-input OR, AND, and disjunctive normal form gates. The modularity and cooperativity of the control elements, coupled with the ability to de novo design an essentially unlimited number of protein components, should enable the design of sophisticated posttranslational control logic over a wide range of biological functions.

DOI: 10.1126/science.aay2790

Source: https://science.sciencemag.org/content/368/6486/78

期刊信息
Science:《科学》,创刊于1880年。隶属于美国科学促进会,最新IF:41.037